SSS - Sequence Similarity Search service

HGC Sequence Similarity Search service manual

Execute several sequence similarity search programs against various biological sequence databases supported at Human Genome Center.

Manual pages

Allowed combinations

Some programs have a limitation in combinations between query-target sequence types (aa: amino acid sequence, nt: nucleic acid sequence).

  • BLAST: aa-aa, aa-nt, nt-aa, nt-nt
  • FASTA: aa-aa, aa-nt, nt-aa, nt-nt
  • SSEARCH: aa-aa, nt-nt
  • EXONERATE: aa-aa, aa-nt, nt-aa, nt-nt
  • TRANS: aa-nt, nt-aa, nt-nt

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